| Estimation of hospital catchment populations using data on patient hospital use in France |
Shirreff, George; Chauvel, Cécile; Casalegno, Jean-Sébastien, et al.Shirreff, George; Chauvel, Cécile; Casalegno, Jean-Sébastien; Vanhems, Philippe; Dananché, Cédric; Redjaline, Abdesslam; Tazarourte, Karim; Nunes, Marta |
Preprint - medRxiv |
2026 |
http://doi.org/10.64898/2026.04.28.26351911 |
| Interactions between influenza and respiratory syncytial viruses: two-pathogen modelling to analyse multiplex data |
Shirreff, George; Chaves, Sandra S.; Coudeville, Laurent, et al.Shirreff, George; Chaves, Sandra S.; Coudeville, Laurent; Mengual-Chuliá, Beatriz; Mira-Iglesias, Ainara; Puig-Barberà, Joan; Orrico-Sanchez, Alejandro; Díez-Domingo, Javier; Viruses (VAHNSI), Valencia Hospital Surveillance Network for the Study of Influenza and Other Respiratory; Lopez-Labrador, F. Xavier; Opatowski, Lulla |
Preprint - medRxiv |
2026 |
http://doi.org/10.64898/2026.09.03.26362151 |
| Association of influenza viral genetic information with severity markers in patients hospitalised with influenza: multicentre retrospective cohort study |
Myint, Aung Pone; Shirreff, George; Baillie, Vicky, et al.Myint, Aung Pone; Shirreff, George; Baillie, Vicky; Bal, Antonin; Boutros, Celina F.; Burtseva, Elena; Coulibaly, Daouda; Danilenko, Daria; Dbaibo, Ghassan; Destras, Gregory; Dia, Ndongo; Drăgănescu, Anca Cristina; Giamberardino, Heloisa I. G.; Komissarov, Andrey B.; Koul, Parvaiz A.; Laguna-Torres, Victor Alberto; LeBlanc, Jason J.; Mira-Iglesias, Ainara; Mironenko, Alla; Orrico-Sánchez, Alejandro; Otieno, Nancy A.; Săndulescu, Oana; Simon, Viviana; Sominina, Anna; Sordillo, Emilia; Tanriover, Mine Durusu; Teteriuk, Nataliia; Unal, Serhat; Van Bakel, Harm; Andrew, Melissa K.; Bresee, Joseph; Lina, Bruno; López-Labrador, F. Xavier; Ortiz, Justin R.; Raboni, Sonia M.; Zhang, Wenqing; Chaves, Sandra S.; Cacciapaglia, Giacomo; Josset, Laurence; Chauvel, Cécile; Nunes, Marta C. |
BMJ open |
2026 |
http://doi.org/10.1136/bmjopen-2025-111643 |
| Accounting for the long-distance transmission route: An epidemiological model of airborne disease transmission in hospitals |
Gaufrès, Olivier; Leclerc, Quentin J.; Derdevet, Julien, et al.Gaufrès, Olivier; Leclerc, Quentin J.; Derdevet, Julien; Shirreff, George; Kernéis, Solen; Opatowski, Lulla; Temime, Laura; Layan, Maylis |
PLoS computational biology |
2026 |
http://doi.org/10.1371/journal.pcbi.1014564 |
| Hospital population density and risk of respiratory infection: Is close contact density dependent? |
Shirreff, George; Thiébaut, Anne C. M.; Huynh, Bich-Tram, et al.Shirreff, George; Thiébaut, Anne C. M.; Huynh, Bich-Tram; NODS-Cov2 Investigation Group; Chelius, Guillaume; Fraboulet, Antoine; Guillemot, Didier; Opatowski, Lulla; Temime, Laura |
Epidemics |
2024 |
http://doi.org/10.1016/j.epidem.2024.100807 |
| Assessing respiratory epidemic potential in French hospitals through collection of close contact data (April-June 2020) |
Shirreff, George; Huynh, Bich-Tram; Duval, Audrey, et al.Shirreff, George; Huynh, Bich-Tram; Duval, Audrey; Pereira, Lara Cristina; Annane, Djillali; Dinh, Aurélien; Lambotte, Olivier; Bulifon, Sophie; Guichardon, Magali; Beaune, Sebastien; Toubiana, Julie; Kermorvant-Duchemin, Elsa; Chéron, Gerard; Cordel, Hugues; Argaud, Laurent; Douplat, Marion; Abraham, Paul; Tazarourte, Karim; Martin-Gaujard, Géraldine; Vanhems, Philippe; Hilliquin, Delphine; Nguyen, Duc; Chelius, Guillaume; Fraboulet, Antoine; EMAE-MESuRS Working Group on Nosocomial SARS-CoV-2 Modelling; Temime, Laura; Opatowski, Lulla; Guillemot, Didier |
Scientific Reports |
2024 |
http://doi.org/10.1038/s41598-023-50228-8 |
| Seasonality and Co-Detection of Respiratory Viral Infections Among Hospitalised Patients Admitted With Acute Respiratory Illness-Valencia Region, Spain, 2010-2021 |
Shirreff, George; Chaves, Sandra S.; Coudeville, Laurent, et al.Shirreff, George; Chaves, Sandra S.; Coudeville, Laurent; Mengual-Chuliá, Beatriz; Mira-Iglesias, Ainara; Puig-Barberà, Joan; Orrico-Sanchez, Alejandro; Díez-Domingo, Javier; Valencia Hospital Surveillance Network for the Study of Influenza and Other Respiratory Viruses (VAHNSI); Opatowski, Lulla; Lopez-Labrador, F. Xavier |
Influenza and Other Respiratory Viruses |
2024 |
http://doi.org/10.1111/irv.70017 |
| Collateral impacts of pandemic COVID-19 drive the nosocomial spread of antibiotic resistance: A modelling study |
Smith, David R. M.; Shirreff, George; Temime, Laura, et al.Smith, David R. M.; Shirreff, George; Temime, Laura; Opatowski, Lulla |
PLoS medicine |
2023 |
http://doi.org/10.1371/journal.pmed.1004240 |
| Sick leave due to COVID-19 during the first pandemic wave in France, 2020 |
Smith, David R. M.; Jijón, Sofía; Oodally, Ajmal, et al.Smith, David R. M.; Jijón, Sofía; Oodally, Ajmal; Shirreff, George; Aït Bouziad, Karim; Ante-Testard, Pearl Anne; Bastard, Jonathan; Bouziri, Hanifa; Daouda, Oumou Salama; Duchemin, Tom; Godon-Rensonnet, Anne-Sophie; Henriot, Paul; Houri, Yasmine; Neynaud, Hélène; Perozziello, Anne; Thonon, Frédérique; Crépey, Pascal; Dab, William; Jean, Kévin; Temime, Laura |
Occupational and Environmental Medicine |
2023 |
http://doi.org/10.1136/oemed-2022-108451 |
| Estimating the risk of incident SARS-CoV-2 infection among healthcare workers in quarantine hospitals: the Egyptian example |
Jijón, Sofía; Al Shafie, Ahmad; Hassan, Essam, et al.Jijón, Sofía; Al Shafie, Ahmad; Hassan, Essam; EMAE-MESuRS working group on nosocomial SARS-CoV-2 modeling; Temime, Laura; Jean, Kévin; El-Kassas, Mohamed |
Scientific Reports |
2022 |
http://doi.org/10.1038/s41598-022-23428-x |
| Measuring Basic Reproduction Number to Assess Effects of Nonpharmaceutical Interventions on Nosocomial SARS-CoV-2 Transmission |
Shirreff, George; Zahar, Jean-Ralph; Cauchemez, Simon, et al.Shirreff, George; Zahar, Jean-Ralph; Cauchemez, Simon; Temime, Laura; Opatowski, Lulla; EMEA-MESuRS Working Group on the Nosocomial Modelling of SARS-CoV-22 |
Emerging Infectious Diseases |
2022 |
http://doi.org/10.3201/eid2807.212339 |
| Rapid antigen testing as a reactive response to surges in nosocomial SARS-CoV-2 outbreak risk |
Smith, David R. M.; Duval, Audrey; Zahar, Jean Ralph, et al.Smith, David R. M.; Duval, Audrey; Zahar, Jean Ralph; EMAE-MESuRS Working Group on Nosocomial SARS-CoV-2 Modelling; Opatowski, Lulla; Temime, Laura |
Nature Communications |
2022 |
http://doi.org/10.1038/s41467-021-27845-w |
| High levels of imported asymptomatic malaria but limited local transmission in KwaZulu-Natal, a South African malaria-endemic province nearing malaria elimination |
Raman, Jaishree; Gast, Laura; Balawanth, Ryleen, et al.Raman, Jaishree; Gast, Laura; Balawanth, Ryleen; Tessema, Sofonias; Brooke, Basil; Maharaj, Rajendra; Munhenga, Givemore; Tshikae, Power; Lakan, Vishan; Mwamba, Tshiama; Makowa, Hazel; Sangweni, Lindi; Mkhabela, Moses; Zondo, Nompumelelo; Mohulatsi, Ernest; Nyawo, Zuziwe; Ngxongo, Sifiso; Msimang, Sipho; Dagata, Nicole; Greenhouse, Bryan; Birkholtz, Lyn-Marie; Shirreff, George; Graffy, Rebecca; Qwabe, Bheki; Moonasar, Devanand |
Malaria Journal |
2020 |
http://doi.org/10.1186/s12936-020-03227-3 |
| Effectiveness of 24-h mobile reporting tool during a malaria outbreak in Mpumalanga Province, South Africa |
Davies, Craig; Graffy, Rebecca; Shandukani, Mbavhalelo, et al.Davies, Craig; Graffy, Rebecca; Shandukani, Mbavhalelo; Baloyi, Ednah; Gast, Laura; Kok, Gerdalize; Mbokazi, Frans; Zita, Alpheus; Zwane, Mandla; Magagula, Ray; Mabuza, Aaron; Ramkrishna, Wayne; Morris, Natashia; Porteous, Jacqueline; Shirreff, George; Blumberg, Lucille; Misiani, Eunice; Moonasar, Devanand |
Malaria Journal |
2019 |
http://doi.org/10.1186/s12936-019-2683-4 |
| Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics |
Kühnert, Denise; Kouyos, Roger; Shirreff, George, et al.Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U.; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F.; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study |
PLoS pathogens |
2018 |
http://doi.org/10.1371/journal.ppat.1006895 |
| Estimated Effect of Inactivated Poliovirus Vaccine Campaigns, Nigeria and Pakistan, January 2014-April 2016 |
Shirreff, George; Wadood, Mufti Zubair; Vaz, Rui Gama, et al.Shirreff, George; Wadood, Mufti Zubair; Vaz, Rui Gama; Sutter, Roland W.; Grassly, Nicholas C. |
Emerging Infectious Diseases |
2017 |
http://doi.org/10.3201/eid2302.161210 |
| Variation in relapse frequency and the transmission potential of Plasmodium vivax malaria |
White, Michael T.; Shirreff, George; Karl, Stephan, et al.White, Michael T.; Shirreff, George; Karl, Stephan; Ghani, Azra C.; Mueller, Ivo |
Proceedings. Biological Sciences |
2016 |
http://doi.org/10.1098/rspb.2016.0048 |
| Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective |
Fraser, Christophe; Lythgoe, Katrina; Leventhal, Gabriel E., et al.Fraser, Christophe; Lythgoe, Katrina; Leventhal, Gabriel E.; Shirreff, George; Hollingsworth, T. Déirdre; Alizon, Samuel; Bonhoeffer, Sebastian |
Science (New York, N.Y.) |
2014 |
http://doi.org/10.1126/science.1243727 |
| Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach |
Shirreff, George; Pellis, Lorenzo; Laeyendecker, Oliver, et al.Shirreff, George; Pellis, Lorenzo; Laeyendecker, Oliver; Fraser, Christophe |
PLoS computational biology |
2011 |
http://doi.org/10.1371/journal.pcbi.1002185 |
| HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda |
Hollingsworth, T. Déirdre; Laeyendecker, Oliver; Shirreff, George, et al.Hollingsworth, T. Déirdre; Laeyendecker, Oliver; Shirreff, George; Donnelly, Christl A.; Serwadda, David; Wawer, Maria J.; Kiwanuka, Noah; Nalugoda, Fred; Collinson-Streng, Aleisha; Ssempijja, Victor; Hanage, William P.; Quinn, Thomas C.; Gray, Ronald H.; Fraser, Christophe |
PLoS pathogens |
2010 |
http://doi.org/10.1371/journal.ppat.1000876 |